2C10 Oxidoreductase date Sep 09, 2005
title The Structure Of A Truncated, Soluble Version Of Semicarbazi Sensitive Amine Oxidase
authors E.Jakobsson, G.J.Kleywegt
compound source
Molecule: Membrane Copper Amine Oxidase
Chain: A, B, C, D
Fragment: Extra-Cellular Domain, Residues 29-763
Synonym: Semicarbazide-Sensitive Amine Oxidase, Vascular Ad Protein 1, Vap-1, Hpao;
Ec: 1.4.3.6
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
symmetry Space Group: P 43
R_factor 0.204 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
130.236 130.236 221.529 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand BMA, CA, CL, CU, FUC, MAN, NAG, TPQ enzyme Oxidoreductase E.C.1.4.3.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of human semicarbazide-sensitive amine oxidase/vascular adhesion protein-1., Jakobsson E, Nilsson J, Ogg D, Kleywegt GJ, Acta Crystallogr D Biol Crystallogr. 2005 Nov;61(Pt 11):1550-62. Epub 2005, Oct 19. PMID:16239734
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (472 Kb) [Save to disk]
  • Biological Unit Coordinates (2c10.pdb1.gz) 231 Kb
  • Biological Unit Coordinates (2c10.pdb2.gz) 233 Kb
  • LPC: Ligand-Protein Contacts for 2C10
  • CSU: Contacts of Structural Units for 2C10
  • Likely Quarternary Molecular Structure file(s) for 2C10
  • Structure Factors (1016 Kb)
  • Retrieve 2C10 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2C10 from S2C, [Save to disk]
  • Re-refined 2c10 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2C10 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2C10
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2C10, from MSDmotif at EBI
  • Fold representative 2c10 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2c10_B] [2c10_A] [2c10] [2c10_C] [2c10_D]
  • SWISS-PROT database: [Q16853]
  • Domain organization of [AOC3_HUMAN] by SWISSPFAM
  • Other resources with information on 2C10
  • Community annotation for 2C10 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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