OCA Atlas for 2UX2

2UX2

Immune System

date

Mar 26, 2007

title

High Resolution Structure Of Human Cd59

authors

K.J.Leath, S.Johnson, P.Roversi, B.P.Morgan, R.A.G.Smith, S.M.Lea

compound

source

Molecule: Cd59 Glycoprotein
Chain: A, B, C
Fragment: Residues 26-102
Synonym: Membrane Attack Complex Inhibition Factor, Macif, Inhibitory Protein, Mac-Ip, Protectin, Mem43 Antigen, Membr Inhibitor Of Reactive Lysis, Mirl, 20 Kda Homologous Restri Factor, Hrf-20,Hrf20,1f5 Antigen;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Ut5600 De3
Expression_system_plasmid: Pet59-06

symmetry

Space Group: P 61

R_factor

0.185

R_Free

0.223

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
60.840	60.840	107.530	90.00	90.00	120.00

method

X-Ray Diffraction

resolution

1.80 Å

Gene
Ontology

Chain	Function	Process	Component
A, C, B

Primary reference

High-resolution structures of bacterially expressed soluble human CD59., Leath KJ, Johnson S, Roversi P, Hughes TR, Smith RA, Mackenzie L, Morgan BP, Lea SM, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Aug 1;63(Pt, 8):648-52. Epub 2007 Jul 28. PMID:17671359

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]

Biological Unit Coordinates (2ux2.pdb1.gz) 15 Kb

Biological Unit Coordinates (2ux2.pdb2.gz) 15 Kb

Biological Unit Coordinates (2ux2.pdb3.gz) 15 Kb

CSU: Contacts of Structural Units for 2UX2

Structure Factors (115 Kb)

Retrieve 2UX2 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2UX2 from S2C, [Save to disk]

Re-refined 2ux2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2UX2 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2UX2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 2UX2, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ux2_C] [2ux2] [2ux2_B] [2ux2_A]

SWISS-PROT database: [P13987]

Domain organization of [CD59_HUMAN] by SWISSPFAM

Domain found in 2UX2: [LU ] by SMART

Other resources with information on 2UX2

Community annotation for 2UX2 at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]