4GKH	Crystal structure of the aminoglycoside phosphotransferase APH(3')-Ia, with substrate kanamycin and small molecule inhibitor 1-NA-PP1	date	2012-08-11
authors	Stogios, P.J., Evdokimova, E., Wawrzak, Z., Minasov, G., Egorova, O., Leo, R.Di., Shakya, T., Spanogiannopoulos, P., Todorovic, N., Capretta, A., Wright, G.D., Savchenko, A., Anderson, W.F., CSGID, Center.for.Structural.Genomics.of.Infectious.Diseases.
compound		source
symmetry		R_factor R_Free 0.2159
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.86
ligand	0J9, ACT, CL, KAN, MSE, NA, PEG	enzyme
Gene Ontology	Chain Function Process Component F, A, J, K, E, B, H, C, D, I, G, L
Primary reference	Structure-guided optimization of protein kinase inhibitors reverses aminoglycoside antibiotic resistance., Stogios PJ, Spanogiannopoulos P, Evdokimova E, Egorova O, Shakya T, Todorovic N, Capretta A, Wright GD, Savchenko A, Biochem J. 2013 Jun 12. PMID:23758273

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1158 Kb) [Save to disk] Biological Unit Coordinates (4gkh.pdb1.gz) 102 Kb Biological Unit Coordinates (4gkh.pdb2.gz) 109 Kb Biological Unit Coordinates (4gkh.pdb3.gz) 106 Kb Biological Unit Coordinates (4gkh.pdb4.gz) 105 Kb Biological Unit Coordinates (4gkh.pdb5.gz) 104 Kb Biological Unit Coordinates (4gkh.pdb6.gz) 109 Kb Biological Unit Coordinates (4gkh.pdb7.gz) 107 Kb Biological Unit Coordinates (4gkh.pdb8.gz) 102 Kb Biological Unit Coordinates (4gkh.pdb9.gz) 105 Kb LPC: Ligand-Protein Contacts for 4GKH CSU: Contacts of Structural Units for 4GKH Structure Factors (3833 Kb) Retrieve 4GKH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4GKH from S2C, [Save to disk] Re-refined 4gkh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4GKH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4GKH

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4GKH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4gkh_C] [4gkh_A] [4gkh_K] [4gkh_L] [4gkh_D] [4gkh_E] [4gkh_H] [4gkh_I] [4gkh_B] [4gkh_G] [4gkh_F] [4gkh] [4gkh_J] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4GKH

Community annotation for 4GKH at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---