5NDD	Membrane Protein	date	Mar 08, 2017
title	Crystal Structure Of A Thermostabilised Human Protease-Activ Receptor-2 (Par2) In Complex With Az8838 At 2.8 Angstrom Re
authors	R.K.Y.Cheng, C.Fiez-Vandal, O.Schlenker, K.Edman, B.Aggeler, D.G. G.Brown, R.M.Cooke, C.E.Dumelin, A.S.Dore, S.Geschwindner, C.Gre O.Hermansson, A.Jazayeri, P.Johansson, L.Leong, R.Prihandoko, M. H.Soutter, A.Snijder, L.Sundstrom, B.Tehan, P.Thornton, D.Troast G.Wiggin, A.Zhukov, F.H.Marshall, N.Dekker
compound		source
Molecule: Lysozyme,Proteinase-Activated Receptor 2,Soluble B562,Proteinase-Activated Receptor 2; Chain: A Synonym: Par-2,Coagulation Factor II Receptor-Like 1,G-Prot Coupled Receptor 11,Thrombin Receptor-Like 1,Cytochrome B-5 Coagulation Factor II Receptor-Like 1,G-Protein Coupled Rec Thrombin Receptor-Like 1; Ec: 3.2.1.17 Engineered: Yes Mutation: Yes		Organism_scientific: Enterobacteria Phage T4, Homo Sapiens, Escherichia Coli; Organism_common: Human Organism_taxid: 10665, 9606, 562 Gene: E, T4tp126, F2rl1, Gpr11, Par2, Cybc Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pfastbac
symmetry	Space Group: P 1	R_factor 0.222 R_Free 0.264
crystal cell	length a length b length c angle alpha angle beta angle gamma 37.109 62.264 87.341 104.88 90.88 96.89
method	X-Ray Diffraction	resolution	2.80 Å
ligand	8TZ, NA, PO4	enzyme	Hydrolase E.C.3.2.1.17 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural insight into allosteric modulation of protease-activated receptor 2., Cheng RKY, Fiez-Vandal C, Schlenker O, Edman K, Aggeler B, Brown DG, Brown GA, Cooke RM, Dumelin CE, Dore AS, Geschwindner S, Grebner C, Hermansson NO, Jazayeri A, Johansson P, Leong L, Prihandoko R, Rappas M, Soutter H, Snijder A, Sundstrom L, Tehan B, Thornton P, Troast D, Wiggin G, Zhukov A, Marshall FH, Dekker N, Nature. 2017 Apr 26. doi: 10.1038/nature22309. PMID:28445455

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk] Biological Unit Coordinates (5ndd.pdb1.gz) 91 Kb LPC: Ligand-Protein Contacts for 5NDD CSU: Contacts of Structural Units for 5NDD Structure Factors (179 Kb) Retrieve 5NDD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5NDD from S2C, [Save to disk] Re-refined 5ndd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5NDD in 3D

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Visual 3D analysis of 5NDD

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ndd_A] [5ndd] SWISS-PROT database: Domain organization of by SWISSPFAM

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