1GWX Transcription date Mar 17, 1999
title Molecular Recognition Of Fatty Acids By Peroxisome Prolifera Activated Receptors
authors H.E.Xu, M.H.Lambert, V.G.Montana, D.J.Park, S.Blanchard, P.Brown, D.Sternbach, J.Lehmann, G.W.Bruce, T.M.Willson, S.A.Kliewer, M.V
compound source
Molecule: Protein (Ppar-Delta)
Chain: A, B
Fragment: Ligand Binding Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ppard
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De30)
Expression_system_plasmid: Pseta With T7 Promoter
symmetry Space Group: P 1 21 1
R_factor 0.246 R_Free 0.303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.250 94.900 96.200 90.00 98.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand 433 BindingDB enzyme
related structures by homologous chain: 1K7L, 1KNU
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMolecular recognition of fatty acids by peroxisome proliferator-activated receptors., Xu HE, Lambert MH, Montana VG, Parks DJ, Blanchard SG, Brown PJ, Sternbach DD, Lehmann JM, Wisely GB, Willson TM, Kliewer SA, Milburn MV, Mol Cell 1999 Mar;3(3):397-403. PMID:10198642
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (1gwx.pdb1.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 1GWX
  • CSU: Contacts of Structural Units for 1GWX
  • Likely Quarternary Molecular Structure file(s) for 1GWX
  • Structure Factors (177 Kb)
  • Retrieve 1GWX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GWX from S2C, [Save to disk]
  • Re-refined 1gwx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1GWX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GWX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GWX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gwxa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1gwxb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gwx_A] [1gwx_B] [1gwx]
  • SWISS-PROT database: [Q03181]
  • Domain organization of [PPARD_HUMAN] by SWISSPFAM
  • Domain found in 1GWX: [HOLI ] by SMART
  • Other resources with information on 1GWX
  • Community annotation for 1GWX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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