5WBY Transferase date Jun 29, 2017
title Crystal Structure Of Mtor(Deltan)-Mlst8-Pras40(Beta-Strand)
authors N.P.Pavletich, H.Yang
compound source
Molecule: Serinethreonine-Protein Kinase Mtor
Chain: B, A
Fragment: Residues 1376-2549
Synonym: Fk506-Binding Protein 12-Rapamycin Complex-Associa Protein 1,Fkbp12-Rapamycin Complex-Associated Protein,Mamma Target Of Rapamycin,Mtor,Mechanistic Target Of Rapamycin,Ra And Fkbp12 Target 1,Rapamycin Target Protein 1;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mtor, Frap, Frap1, Frap2, Raft1, Rapt1
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293

Molecule: Target Of Rapamycin Complex Subunit Lst8
Chain: D, C
Synonym: Torc Subunit Lst8,G Protein Beta Subunit-Like,Prot Gbetal,Mammalian Lethal With Sec13 Protein 8,Mlst8;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mlst8, Gbl, Lst8
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293

Molecule: Proline-Rich Akt1 Substrate 1
Chain: P, O
Fragment: Residues 114-207
Synonym: 40 Kda Proline-Rich Akt Substrate
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Akt1s1, Pras40
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet2
symmetry Space Group: P 2 21 21
R_factor 0.233 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
138.926 163.044 206.666 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand
enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C
  • protein serine/threonine kin...


  • O, P


    Primary referenceMechanisms of mTORC1 activation by RHEB and inhibition by PRAS40., Yang H, Jiang X, Li B, Yang HJ, Miller M, Yang A, Dhar A, Pavletich NP, Nature. 2017 Dec 13. pii: nature25023. doi: 10.1038/nature25023. PMID:29236692
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (938 Kb) [Save to disk]
  • Biological Unit Coordinates (5wby.pdb1.gz) 468 Kb
  • Biological Unit Coordinates (5wby.pdb2.gz) 466 Kb
  • CSU: Contacts of Structural Units for 5WBY
  • Structure Factors (695 Kb)
  • Retrieve 5WBY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WBY from S2C, [Save to disk]
  • View 5WBY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WBY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5wby from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wby_P] [5wby_B] [5wby_O] [5wby_C] [5wby_D] [5wby_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WBY
  • Community annotation for 5WBY at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science