1FFJ Toxin date Jul 25, 2000
title Nmr Structure Of Cardiotoxin In Dpc-Micelle
authors P.V.Dubovskii, D.V.Dementieva, E.V.Bocharov, Y.N.Utkin, A.S.Arseniev
compound source
Molecule: Cytotoxin 2
Chain: A
Fragment: 1
Synonym: Cardiotoxin
Organism_scientific: Naja Oxiana
Organism_common: Central Asian Cobra
Organism_taxid: 8657
Secretion: Venom
methodSolution NMR
related structures by homologous chain: 1CVO, 1CXO, 1RL5
  • toxin activity

  • Primary referenceMembrane binding motif of the P-type cardiotoxin., Dubovskii PV, Dementieva DV, Bocharov EV, Utkin YN, Arseniev AS, J Mol Biol 2001 Jan 5;305(1):137-49. PMID:11114253
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (303 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1FFJ
  • Original NMR restraints for 1FFJ from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1FFJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FFJ from S2C, [Save to disk]
  • View 1FFJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FFJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FFJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ffja_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1ffj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ffj_A] [1ffj]
  • SWISS-PROT database: [P01441]
  • Domain organization of [CX2_NAJOX] by SWISSPFAM
  • Other resources with information on 1FFJ
  • Community annotation for 1FFJ at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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