4IHB Membrane Protein date Dec 18, 2012
title X-Ray Structure Of The Canonical C2a Domain From Human Dysfe
authors R.B.Sutton, K.L.Fuson
compound source
Molecule: Dysferlin
Chain: A, B, C, D, E, F
Fragment: C2a Domain, Unp Residues 1-124
Synonym: Dystrophy-Associated Fer-1-Like Protein, Fer-1-Lik 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dysf, Fer1l1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t
symmetry Space Group: I 1 2 1
R_factor 0.200 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.413 70.670 118.310 90.00 113.39 90.00
method X-Ray Diffractionresolution 2.04 Å
ligand CA, FMT enzyme
Primary referenceAlternate Splicing of Dysferlin C2A Confers Ca-Dependent and Ca-Independent Binding for Membrane Repair., Fuson K, Rice A, Mahling R, Snow A, Nayak K, Shanbhogue P, Meyer AG, Redpath GM, Hinderliter A, Cooper ST, Sutton RB, Structure. 2013 Nov 13. pii: S0969-2126(13)00392-4. doi:, 10.1016/j.str.2013.10.001. PMID:24239457
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (275 Kb) [Save to disk]
  • Biological Unit Coordinates (4ihb.pdb1.gz) 47 Kb
  • Biological Unit Coordinates (4ihb.pdb2.gz) 47 Kb
  • Biological Unit Coordinates (4ihb.pdb3.gz) 47 Kb
  • Biological Unit Coordinates (4ihb.pdb4.gz) 48 Kb
  • Biological Unit Coordinates (4ihb.pdb5.gz) 47 Kb
  • Biological Unit Coordinates (4ihb.pdb6.gz) 46 Kb
  • Biological Unit Coordinates (4ihb.pdb7.gz) 262 Kb
  • Biological Unit Coordinates (4ihb.pdb8.gz) 264 Kb
  • LPC: Ligand-Protein Contacts for 4IHB
  • CSU: Contacts of Structural Units for 4IHB
  • Structure Factors (690 Kb)
  • Retrieve 4IHB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IHB from S2C, [Save to disk]
  • Re-refined 4ihb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4IHB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4IHB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4IHB, from MSDmotif at EBI
  • Fold representative 4ihb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ihb_A] [4ihb] [4ihb_D] [4ihb_B] [4ihb_F] [4ihb_E] [4ihb_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4IHB: [C2 ] by SMART
  • Other resources with information on 4IHB
  • Community annotation for 4IHB at PDBWiki (http://pdbwiki.org)

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