2MME Protein Transport date Mar 14, 2014
title Hybrid Structure Of The Shigella Flexneri Mxih Type Three Se System Needle
authors J.P.Demers, B.Habenstein, A.Loquet, S.K.Vasa, S.Becker, D.Baker, A N.G.Sgourakis
compound source
Molecule: Mxih
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X, Y, Z, A, B, C;
Engineered: Yes
Organism_scientific: Shigella Flexneri
Organism_taxid: 623
Strain: Serotype 6, Bc-114
Gene: Mxih
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet16b
methodSolid-State NMR; Electron Microscopy
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, Y, E, V, Z, Q, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U


Primary referenceHigh-resolution structure of the Shigella type-III secretion needle by solid-state NMR and cryo-electron microscopy., Demers JP, Habenstein B, Loquet A, Kumar Vasa S, Giller K, Becker S, Baker D, Lange A, Sgourakis NG, Nat Commun. 2014 Sep 29;5:4976. doi: 10.1038/ncomms5976. PMID:25264107
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (6245 Kb) [Save to disk]
  • Biological Unit Coordinates (2mme.pdb1.gz) 626 Kb
  • CSU: Contacts of Structural Units for 2MME
  • Original NMR restraints for 2MME from PDB
  • Retrieve 2MME in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2MME from S2C, [Save to disk]
  • View 2MME in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2MME
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2MME, from MSDmotif at EBI
  • Fold representative 2mme from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mme_J] [2mme_c] [2mme_I] [2mme_Q] [2mme_B] [2mme_X] [2mme_D] [2mme_O] [2mme_K] [2mme] [2mme_V] [2mme_M] [2mme_b] [2mme_P] [2mme_a] [2mme_A] [2mme_G] [2mme_F] [2mme_L] [2mme_Y] [2mme_R] [2mme_N] [2mme_T] [2mme_W] [2mme_U] [2mme_E] [2mme_H] [2mme_C] [2mme_Z] [2mme_S]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2MME
  • Community annotation for 2MME at PDBWiki (http://pdbwiki.org)

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