2MME Protein Transport date Mar 14, 2014
title Hybrid Structure Of The Shigella Flexneri Mxih Type Three Se System Needle
authors J.P.Demers, B.Habenstein, A.Loquet, S.K.Vasa, S.Becker, D.Baker, A N.G.Sgourakis
compound source
Molecule: Mxih
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X, Y, Z, A, B, C;
Engineered: Yes
Organism_scientific: Shigella Flexneri
Organism_taxid: 623
Strain: Serotype 6, Bc-114
Gene: Mxih
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet16b
methodSolid-State NMR; Electron Microscopy
Gene
Ontology
ChainFunctionProcessComponent
S, F, a, T, N, K, Y, E, V, Z, Q, M, C, L, A, J, O, W, X, P, B, H, c, b, D, R, I, G, U


Primary referenceHigh-resolution structure of the Shigella type-III secretion needle by solid-state NMR and cryo-electron microscopy., Demers JP, Habenstein B, Loquet A, Kumar Vasa S, Giller K, Becker S, Baker D, Lange A, Sgourakis NG, Nat Commun. 2014 Sep 29;5:4976. doi: 10.1038/ncomms5976. PMID:25264107
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (6245 Kb) [Save to disk]
  • Biological Unit Coordinates (2mme.pdb1.gz) 626 Kb
  • CSU: Contacts of Structural Units for 2MME
  • Original NMR restraints for 2MME from PDB
  • Retrieve 2MME in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2MME from S2C, [Save to disk]
  • View 2MME in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2MME
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2MME, from MSDmotif at EBI
  • Fold representative 2mme from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2mme_J] [2mme_c] [2mme_I] [2mme_Q] [2mme_B] [2mme_X] [2mme_D] [2mme_O] [2mme_K] [2mme] [2mme_V] [2mme_M] [2mme_b] [2mme_P] [2mme_a] [2mme_A] [2mme_G] [2mme_F] [2mme_L] [2mme_Y] [2mme_R] [2mme_N] [2mme_T] [2mme_W] [2mme_U] [2mme_E] [2mme_H] [2mme_C] [2mme_Z] [2mme_S]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2MME
  • Community annotation for 2MME at PDBWiki (http://pdbwiki.org)

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