1P8J Hydrolase Hydrolase Inhibitor date May 07, 2003
title Crystal Structure Of The Proprotein Convertase Furin
authors S.Henrich, A.Cameron, G.P.Bourenkov, R.Kiefersauer, R.Huber, I.Li W.Bode, M.E.Than
compound source
Molecule: Furin Precursor
Chain: A, B, C, D, E, F, G, H
Synonym: Paired Basic Amino Acid Residue Cleaving Enzyme, P Dibasic Processing Enzyme;
Ec: 3.4.21.75
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Furin Or Fur Or Pcsk3
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_strain: Dg44
Expression_system_organ: Ovary Cells
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdna3.1(-)-Myc-His

Molecule: Decanoyl-Arg-Val-Lys-Arg-Chloromethylketone Inhib
Chain: J, K, L, M, N, P, Q, R
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide (Decanoyl-Arg-Val-Lys-Arg- Chloromethylketone) Was Chemically Synthesized
symmetry Space Group: P 1
R_factor 0.188 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.305 135.392 137.806 103.56 98.98 107.09
method X-Ray Diffractionresolution 2.60 Å
ligand 0QE, AR7, BMA, CA, DKA, FUC, FUL, GAL, MAN, NAG, SO4 enzyme Hydrolase E.C.3.4.21.75 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceThe crystal structure of the proprotein processing proteinase furin explains its stringent specificity., Henrich S, Cameron A, Bourenkov GP, Kiefersauer R, Huber R, Lindberg I, Bode W, Than ME, Nat Struct Biol 2003 Jul;10(7):520-6. PMID:12794637
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (638 Kb) [Save to disk]
  • Biological Unit Coordinates (1p8j.pdb1.gz) 317 Kb
  • Biological Unit Coordinates (1p8j.pdb2.gz) 313 Kb
  • Biological Unit Coordinates (1p8j.pdb3.gz) 83 Kb
  • Biological Unit Coordinates (1p8j.pdb4.gz) 84 Kb
  • Biological Unit Coordinates (1p8j.pdb5.gz) 89 Kb
  • Biological Unit Coordinates (1p8j.pdb6.gz) 84 Kb
  • Biological Unit Coordinates (1p8j.pdb7.gz) 85 Kb
  • Biological Unit Coordinates (1p8j.pdb8.gz) 84 Kb
  • Biological Unit Coordinates (1p8j.pdb9.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 1P8J
  • CSU: Contacts of Structural Units for 1P8J
  • Likely Quarternary Molecular Structure file(s) for 1P8J
  • Structure Factors (1425 Kb)
  • Retrieve 1P8J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P8J from S2C, [Save to disk]
  • Re-refined 1p8j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1P8J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1P8J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1P8J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p8ja2, region A:109-442 [Jmol] [rasmolscript] [script source]
        - Domain d1p8ja1, region A:443-578 [Jmol] [rasmolscript] [script source]
        - Domain d1p8jb2, region B:109-442 [Jmol] [rasmolscript] [script source]
        - Domain d1p8jb1, region B:443-576 [Jmol] [rasmolscript] [script source]
        - Domain d1p8jc2, region C:109-442 [Jmol] [rasmolscript] [script source]
        - Domain d1p8jc1, region C:443-575 [Jmol] [rasmolscript] [script source]
        - Domain d1p8jd2, region D:109-442 [Jmol] [rasmolscript] [script source]
        - Domain d1p8jd1, region D:443-575 [Jmol] [rasmolscript] [script source]
        - Domain d1p8je2, region E:109-442 [Jmol] [rasmolscript] [script source]
        - Domain d1p8je1, region E:443-575 [Jmol] [rasmolscript] [script source]
        - Domain d1p8jf2, region F:108-442 [Jmol] [rasmolscript] [script source]
        - Domain d1p8jf1, region F:443-575 [Jmol] [rasmolscript] [script source]
        - Domain d1p8jg2, region G:109-442 [Jmol] [rasmolscript] [script source]
        - Domain d1p8jg1, region G:443-575 [Jmol] [rasmolscript] [script source]
        - Domain d1p8jh2, region H:110-442 [Jmol] [rasmolscript] [script source]
        - Domain d1p8jh1, region H:443-575 [Jmol] [rasmolscript] [script source]
  • Fold representative 1p8j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p8j_G] [1p8j_C] [1p8j_R] [1p8j_L] [1p8j_N] [1p8j_F] [1p8j_Q] [1p8j_A] [1p8j_P] [1p8j_D] [1p8j] [1p8j_K] [1p8j_J] [1p8j_B] [1p8j_H] [1p8j_M] [1p8j_E]
  • SWISS-PROT database: [P23188]
  • Domain organization of [FURIN_MOUSE] by SWISSPFAM
  • Other resources with information on 1P8J
  • Community annotation for 1P8J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science